IOS – How to archive articles I’m reading on the iPad? (Evernote, Instapaper, etc)

I read a number of magazines and newspapers daily on my iPad, using a number of different apps. I generally start out in Flipboard, then read the New York Times using the dedicated app in Newsstand, then often read bits from The Week UK, again using their Newsstand app. I usually end up in Safari, reading something further on a regular website.

I'd like to archive some of the articles that I read, and ideally I'd like a single mechanism that works in all of these apps. My strategy at the moment is to use the ubiquitous "Email" button in almost any iPad app to send article links to Evernote by means of the Evernote email service.

That causes a link to the article to be archived into my Evernote database, sometimes together with a little blurb about the article.

What I'd most like, though, is for the full text of the article, ideally even with a nice layout, to be archived into Evernote. As a PDF would be a huge bonus.

I'm aware that I can go through various mechanisms of opening up the links on my desktop computer, then printing the articles as PDFs and having them added back to Evernote. I'm also aware that this could be a quick process, if I utilize folder actions or a "PDF to Evernote" service. But ideally, I'd like this whole process to be a single step from my iPad itself. I don't relish the idea of going back to my desktop for constant administration of this system.

I should mention that I'm not a regular Instapaper user, though I know it's a well-loved service. Instapaper seems designed for "time shifting" reading, which isn't something I do. I'm more interested in archiving and referencing. I use Evernote because I like that it is agnostic to the kind of information I put in (I can combine text snippets, images, and whole PDFs), I like that the database is on my computer and not solely in the cloud, and I like its search functions.

So my questions are:

1. Is there a way to email article links to some service which will convert those links into full PDFs, then email them on to Evernote?
2. Is there a better way to keep articles and snippets than Evernote, one which I can send things into by email?
3. Is there a wholly different way of doing this that may be more efficient and avoid the problems of emailing links instead of PDFs?

EDIT:

Thanks to the suggestions I've gotten here, I've tried exploring more options. I'm still stuck, and perhaps someone here can help move me forward.

The critical piece was discovering a website called "If This, Then That,", which acts as a glue between other websites. I've set up an action on IFTTT to monitor my Instapaper RSS feed for a new article, then to automatically add that article to Evernote. Since Instapaper also provides an email address for adding items to the reading list, this should allow me to simply email to Instapaper, and have everything automatically download in Evernote.

Unfortunately the Instapaper RSS feed doesn't seem to pick up updates to my Instapaper reading list. Furthermore, links sent from the New York Times are not translated into the full articles by Instapaper, they're just kept as links. So close and yet so far!

I've been experimenting with Pocket and Readability for the same problem. So far nothing works. But I feel I'm on the right track with IFTTT.