I need to parse drug names from Medline abstracts. I was hoping to do this by getting outputs from grep -wf
and grep -owf
then using paste, but the outputs do not correspond, because grep -owf
creates an output for each match, even if it is in the same line.
Pattern file:
DrugA
DrugB
DrugC
DrugD
File to parse:
In our study, DrugA and DrugB were found to be effective. DrugA was more effective than DrugB.
In our study, DrugC was found to be effective
In our study, DrugX was found to be effective
Desired output:
DrugA In our study, DrugA and DrugB were found to be effective. DrugA was more effective.
DrugB In our study, DrugA and DrugB were found to be effective. DrugA was more effective.
DrugC In our study, DrugC was found to be effective
Best Answer
It's not strictly
grep
alone, but this does the trick: