Akonadi refuses to start on my fresh installation of KDE 4.6.0 from the kubuntu-backports PPA on Ubuntu 10.10 Maverick Meerkat, preventing me from usking KMail. Here is the full error output:
patches@pleistocene:~/.local/share$ akonadictl start Starting Akonadi Server... done. patches@pleistocene:~/.local/share$ Connecting to deprecated signal QDBusConnectionInterface::serviceOwnerChanged(QString,QString,QString) search paths: ("/home/patches/bin", "/usr/local/sbin", "/usr/local/bin", "/usr/sbin", "/usr/bin", "/sbin", "/bin", "/usr/games", "/usr/sbin", "/usr/local/sbin", "/usr/local/libexec", "/usr/libexec", "/opt/mysql/libexec", "/opt/local/lib/mysql5/bin", "/opt/mysql/sbin") Found mysql_install_db: "/usr/bin/mysql_install_db" Found mysqlcheck: "/usr/bin/mysqlcheck" Database process exited unexpectedly during initial connection! executable: "/usr/sbin/mysqld-akonadi" arguments: ("--defaults-file=/home/patches/.local/share/akonadi//mysql.conf", "--datadir=/home/patches/.local/share/akonadi/db_data/", "--socket=/home/patches/.local/share/akonadi/socket-pleistocene/mysql.socket") stdout: "" stderr: "Could not open required defaults file: /home/patches/.local/share/akonadi//mysql.conf Fatal error in defaults handling. Program aborted 110209 16:41:12 [Warning] Can't create test file /home/patches/.local/share/akonadi/db_data/pleistocene.lower-test 110209 16:41:12 [Warning] Can't create test file /home/patches/.local/share/akonadi/db_data/pleistocene.lower-test 110209 16:41:12 [Note] Plugin 'FEDERATED' is disabled. /usr/sbin/mysqld-akonadi: Can't find file: './mysql/plugin.frm' (errno: 13) 110209 16:41:12 [ERROR] Can't open the mysql.plugin table. Please run mysql_upgrade to create it. 110209 16:41:12 InnoDB: Operating system error number 13 in a file operation. InnoDB: The error means mysqld does not have the access rights to InnoDB: the directory. InnoDB: File name ./ibdata1 InnoDB: File operation call: 'create'. InnoDB: Cannot continue operation. " exit code: 1 process error: "Unknown error" "[ 0: akonadiserver(_Z11akBacktracev+0x35) [0x8086055] 1: akonadiserver() [0x8086516] 2: [0xb772e400] 3: [0xb772e416] 4: /lib/libc.so.6(gsignal+0x51) [0xb6e9f941] 5: /lib/libc.so.6(abort+0x182) [0xb6ea2e42] 6: /usr/lib/libQtCore.so.4(_Z17qt_message_output9QtMsgTypePKc+0x8c) [0xb74d62dc] 7: akonadiserver(_ZN15FileDebugStream9writeDataEPKcx+0xc4) [0x8087574] 8: /usr/lib/libQtCore.so.4(_ZN9QIODevice5writeEPKcx+0x8e) [0xb757168e] 9: /usr/lib/libQtCore.so.4(+0x103425) [0xb7581425] 10: /usr/lib/libQtCore.so.4(_ZN11QTextStreamD1Ev+0x3d) [0xb758295d] 11: akonadiserver(_ZN6QDebugD1Ev+0x43) [0x8081b73] 12: akonadiserver(_ZN13DbConfigMysql19startInternalServerEv+0x1c27) [0x810c177] 13: akonadiserver(_ZN7Akonadi13AkonadiServer20startDatabaseProcessEv+0xe3) [0x8087a23] 14: akonadiserver(_ZN7Akonadi13AkonadiServerC1EP7QObject+0xca) [0x8088b6a] 15: akonadiserver(_ZN7Akonadi13AkonadiServer8instanceEv+0x48) [0x808a1d8] 16: akonadiserver(main+0x364) [0x8080fb4] 17: /lib/libc.so.6(__libc_start_main+0xe7) [0xb6e8bce7] 18: akonadiserver() [0x8080b81] ] " ProcessControl: Application 'akonadiserver' returned with exit code 255 (Unknown error) search paths: ("/home/patches/bin", "/usr/local/sbin", "/usr/local/bin", "/usr/sbin", "/usr/bin", "/sbin", "/bin", "/usr/games", "/usr/sbin", "/usr/local/sbin", "/usr/local/libexec", "/usr/libexec", "/opt/mysql/libexec", "/opt/local/lib/mysql5/bin", "/opt/mysql/sbin") Found mysql_install_db: "/usr/bin/mysql_install_db" Found mysqlcheck: "/usr/bin/mysqlcheck" Database process exited unexpectedly during initial connection! executable: "/usr/sbin/mysqld-akonadi" arguments: ("--defaults-file=/home/patches/.local/share/akonadi//mysql.conf", "--datadir=/home/patches/.local/share/akonadi/db_data/", "--socket=/home/patches/.local/share/akonadi/socket-pleistocene/mysql.socket") stdout: "" stderr: "Could not open required defaults file: /home/patches/.local/share/akonadi//mysql.conf Fatal error in defaults handling. Program aborted 110209 16:41:12 [Warning] Can't create test file /home/patches/.local/share/akonadi/db_data/pleistocene.lower-test 110209 16:41:12 [Warning] Can't create test file /home/patches/.local/share/akonadi/db_data/pleistocene.lower-test 110209 16:41:12 [Note] Plugin 'FEDERATED' is disabled. /usr/sbin/mysqld-akonadi: Can't find file: './mysql/plugin.frm' (errno: 13) 110209 16:41:12 [ERROR] Can't open the mysql.plugin table. Please run mysql_upgrade to create it. 110209 16:41:12 InnoDB: Operating system error number 13 in a file operation. InnoDB: The error means mysqld does not have the access rights to InnoDB: the directory. InnoDB: File name ./ibdata1 InnoDB: File operation call: 'create'. InnoDB: Cannot continue operation. " exit code: 1 process error: "Unknown error" "[ 0: akonadiserver(_Z11akBacktracev+0x35) [0x8086055] 1: akonadiserver() [0x8086516] 2: [0xb77ae400] 3: [0xb77ae416] 4: /lib/libc.so.6(gsignal+0x51) [0xb6f1f941] 5: /lib/libc.so.6(abort+0x182) [0xb6f22e42] 6: /usr/lib/libQtCore.so.4(_Z17qt_message_output9QtMsgTypePKc+0x8c) [0xb75562dc] 7: akonadiserver(_ZN15FileDebugStream9writeDataEPKcx+0xc4) [0x8087574] 8: /usr/lib/libQtCore.so.4(_ZN9QIODevice5writeEPKcx+0x8e) [0xb75f168e] 9: /usr/lib/libQtCore.so.4(+0x103425) [0xb7601425] 10: /usr/lib/libQtCore.so.4(_ZN11QTextStreamD1Ev+0x3d) [0xb760295d] 11: akonadiserver(_ZN6QDebugD1Ev+0x43) [0x8081b73] 12: akonadiserver(_ZN13DbConfigMysql19startInternalServerEv+0x1c27) [0x810c177] 13: akonadiserver(_ZN7Akonadi13AkonadiServer20startDatabaseProcessEv+0xe3) [0x8087a23] 14: akonadiserver(_ZN7Akonadi13AkonadiServerC1EP7QObject+0xca) [0x8088b6a] 15: akonadiserver(_ZN7Akonadi13AkonadiServer8instanceEv+0x48) [0x808a1d8] 16: akonadiserver(main+0x364) [0x8080fb4] 17: /lib/libc.so.6(__libc_start_main+0xe7) [0xb6f0bce7] 18: akonadiserver() [0x8080b81] ] " ProcessControl: Application 'akonadiserver' returned with exit code 255 (Unknown error) search paths: ("/home/patches/bin", "/usr/local/sbin", "/usr/local/bin", "/usr/sbin", "/usr/bin", "/sbin", "/bin", "/usr/games", "/usr/sbin", "/usr/local/sbin", "/usr/local/libexec", "/usr/libexec", "/opt/mysql/libexec", "/opt/local/lib/mysql5/bin", "/opt/mysql/sbin") Found mysql_install_db: "/usr/bin/mysql_install_db" Found mysqlcheck: "/usr/bin/mysqlcheck" Database process exited unexpectedly during initial connection! executable: "/usr/sbin/mysqld-akonadi" arguments: ("--defaults-file=/home/patches/.local/share/akonadi//mysql.conf", "--datadir=/home/patches/.local/share/akonadi/db_data/", "--socket=/home/patches/.local/share/akonadi/socket-pleistocene/mysql.socket") stdout: "" stderr: "Could not open required defaults file: /home/patches/.local/share/akonadi//mysql.conf Fatal error in defaults handling. Program aborted 110209 16:41:12 [Warning] Can't create test file /home/patches/.local/share/akonadi/db_data/pleistocene.lower-test 110209 16:41:12 [Warning] Can't create test file /home/patches/.local/share/akonadi/db_data/pleistocene.lower-test 110209 16:41:12 [Note] Plugin 'FEDERATED' is disabled. /usr/sbin/mysqld-akonadi: Can't find file: './mysql/plugin.frm' (errno: 13) 110209 16:41:12 [ERROR] Can't open the mysql.plugin table. Please run mysql_upgrade to create it. 110209 16:41:12 InnoDB: Operating system error number 13 in a file operation. InnoDB: The error means mysqld does not have the access rights to InnoDB: the directory. InnoDB: File name ./ibdata1 InnoDB: File operation call: 'create'. InnoDB: Cannot continue operation. " exit code: 1 process error: "Unknown error" "[ 0: akonadiserver(_Z11akBacktracev+0x35) [0x8086055] 1: akonadiserver() [0x8086516] 2: [0xb778b400] 3: [0xb778b416] 4: /lib/libc.so.6(gsignal+0x51) [0xb6efc941] 5: /lib/libc.so.6(abort+0x182) [0xb6effe42] 6: /usr/lib/libQtCore.so.4(_Z17qt_message_output9QtMsgTypePKc+0x8c) [0xb75332dc] 7: akonadiserver(_ZN15FileDebugStream9writeDataEPKcx+0xc4) [0x8087574] 8: /usr/lib/libQtCore.so.4(_ZN9QIODevice5writeEPKcx+0x8e) [0xb75ce68e] 9: /usr/lib/libQtCore.so.4(+0x103425) [0xb75de425] 10: /usr/lib/libQtCore.so.4(_ZN11QTextStreamD1Ev+0x3d) [0xb75df95d] 11: akonadiserver(_ZN6QDebugD1Ev+0x43) [0x8081b73] 12: akonadiserver(_ZN13DbConfigMysql19startInternalServerEv+0x1c27) [0x810c177] 13: akonadiserver(_ZN7Akonadi13AkonadiServer20startDatabaseProcessEv+0xe3) [0x8087a23] 14: akonadiserver(_ZN7Akonadi13AkonadiServerC1EP7QObject+0xca) [0x8088b6a] 15: akonadiserver(_ZN7Akonadi13AkonadiServer8instanceEv+0x48) [0x808a1d8] 16: akonadiserver(main+0x364) [0x8080fb4] 17: /lib/libc.so.6(__libc_start_main+0xe7) [0xb6ee8ce7] 18: akonadiserver() [0x8080b81] ] " ProcessControl: Application 'akonadiserver' returned with exit code 255 (Unknown error) search paths: ("/home/patches/bin", "/usr/local/sbin", "/usr/local/bin", "/usr/sbin", "/usr/bin", "/sbin", "/bin", "/usr/games", "/usr/sbin", "/usr/local/sbin", "/usr/local/libexec", "/usr/libexec", "/opt/mysql/libexec", "/opt/local/lib/mysql5/bin", "/opt/mysql/sbin") Found mysql_install_db: "/usr/bin/mysql_install_db" Found mysqlcheck: "/usr/bin/mysqlcheck" Database process exited unexpectedly during initial connection! executable: "/usr/sbin/mysqld-akonadi" arguments: ("--defaults-file=/home/patches/.local/share/akonadi//mysql.conf", "--datadir=/home/patches/.local/share/akonadi/db_data/", "--socket=/home/patches/.local/share/akonadi/socket-pleistocene/mysql.socket") stdout: "" stderr: "Could not open required defaults file: /home/patches/.local/share/akonadi//mysql.conf Fatal error in defaults handling. Program aborted 110209 16:41:12 [Warning] Can't create test file /home/patches/.local/share/akonadi/db_data/pleistocene.lower-test 110209 16:41:12 [Warning] Can't create test file /home/patches/.local/share/akonadi/db_data/pleistocene.lower-test 110209 16:41:12 [Note] Plugin 'FEDERATED' is disabled. /usr/sbin/mysqld-akonadi: Can't find file: './mysql/plugin.frm' (errno: 13) 110209 16:41:12 [ERROR] Can't open the mysql.plugin table. Please run mysql_upgrade to create it. 110209 16:41:12 InnoDB: Operating system error number 13 in a file operation. InnoDB: The error means mysqld does not have the access rights to InnoDB: the directory. InnoDB: File name ./ibdata1 InnoDB: File operation call: 'create'. InnoDB: Cannot continue operation. " exit code: 1 process error: "Unknown error" "[ 0: akonadiserver(_Z11akBacktracev+0x35) [0x8086055] 1: akonadiserver() [0x8086516] 2: [0xb784e400] 3: [0xb784e416] 4: /lib/libc.so.6(gsignal+0x51) [0xb6fbf941] 5: /lib/libc.so.6(abort+0x182) [0xb6fc2e42] 6: /usr/lib/libQtCore.so.4(_Z17qt_message_output9QtMsgTypePKc+0x8c) [0xb75f62dc] 7: akonadiserver(_ZN15FileDebugStream9writeDataEPKcx+0xc4) [0x8087574] 8: /usr/lib/libQtCore.so.4(_ZN9QIODevice5writeEPKcx+0x8e) [0xb769168e] 9: /usr/lib/libQtCore.so.4(+0x103425) [0xb76a1425] 10: /usr/lib/libQtCore.so.4(_ZN11QTextStreamD1Ev+0x3d) [0xb76a295d] 11: akonadiserver(_ZN6QDebugD1Ev+0x43) [0x8081b73] 12: akonadiserver(_ZN13DbConfigMysql19startInternalServerEv+0x1c27) [0x810c177] 13: akonadiserver(_ZN7Akonadi13AkonadiServer20startDatabaseProcessEv+0xe3) [0x8087a23] 14: akonadiserver(_ZN7Akonadi13AkonadiServerC1EP7QObject+0xca) [0x8088b6a] 15: akonadiserver(_ZN7Akonadi13AkonadiServer8instanceEv+0x48) [0x808a1d8] 16: akonadiserver(main+0x364) [0x8080fb4] 17: /lib/libc.so.6(__libc_start_main+0xe7) [0xb6fabce7] 18: akonadiserver() [0x8080b81] ] " ProcessControl: Application 'akonadiserver' returned with exit code 255 (Unknown error) "akonadiserver" crashed too often and will not be restarted!
I tried moving the ~/.local/share/akonadi folder and running it fresh, and I also tried starting Akonadi from a brand new user, all to no avail.
Requested by @djeikyb:
patches@pleistocene:~$ ls -ld ~/.local drwxrwx--- 3 patches patches 4096 2011-02-07 03:15 /home/patches/.local patches@pleistocene:~$ mysql_upgrade Looking for 'mysql' as: mysql Looking for 'mysqlcheck' as: mysqlcheck Running 'mysqlcheck' with connection arguments: '--port=3306' '--socket=/var/run/mysqld/mysqld.sock' mysqlcheck: Got error: 2002: Can't connect to local MySQL server through socket '/var/run/mysqld/mysqld.sock' (2) when trying to connect FATAL ERROR: Upgrade failed patches@pleistocene:~$ mysql_upgrade -S ~/.local/share/akonadi/socket-pleistocene/ Looking for 'mysql' as: mysql Looking for 'mysqlcheck' as: mysqlcheck Running 'mysqlcheck' with connection arguments: '--port=3306' '--socket=/var/run/mysqld/mysqld.sock' '--socket=/home/patches/.local/share/akonadi/socket-pleistocene/' mysqlcheck: Got error: 2002: Can't connect to local MySQL server through socket '/home/patches/.local/share/akonadi/socket-pleistocene/' (111) when trying to connect FATAL ERROR: Upgrade failed
Best Answer
This seems to be a reoccurring problem for me on each install that I forget about. The above solution sort of solves the problem, but I wonder if there is another way. At this point, Ubuntu 11.10 Oneiric, all you need is
to get Aknoadi up an running. But let's analyze the problem.
Apparmor is an adminstration security utility that places restrictions on programs. As Ubuntu is configured, the apparmor administrative utility enforces a security profile on /usr/sbin/mysqld-akonadi. This profile is in /etc/apparmor.d/usr.sbin.mysqld-akonadi", and it contains the following specification, which I've abbreviated here for the particular situation:
I'm not sure, but I believe that "r" means "read", "w" means "write", and "k" means "mknod". This is saying that mysqld is allowed to create files and directories anywhere under the user's aknoadi directory.
Where/usr/sbin/mysqld-akonadi is failing according to the /var/log/kern.log is :
It is saying that it is failing exactly on the "mknod" call. Strange, since I think it's configured for it.
However, "man apparmor" contains the following lines:
"A confined process can not call mknod(2) to create character or block devices."
This restriction seems to be in place regardless of the specification in the specific profile. A "confined" process is one that is in "enforce" mode. Issuing the aforementioned "aa-complain" command "unconfines" the process and then it is allowed to create the sockets, only complaining about it, along with everything else it is allowed to do, increasing your logs.
It is unclear whether with this seemingly uncircumventable restriction of using "mknod" in creating the mysql sockets can be configured away on the akonadi side. In any case, those seem only to be "Warnings" in the Akonadi log, and it seems that the real Errors are from things like :
of which Apparmor seems to be configured to allow. I'm at a loss on this one. However, switching the security OFF into complain mode makes it work. I guess you could just remove usr.sbin.mysql-akonadi from /etc/apparmor.d/ and that would be just as effective.