MacOS – Macbook pro making clicking noise

There could be several things here that are creating the lag time, but there is never a need to reinstall everything.

Plan A: I actually do these things on the first Monday of every month

Purge Caches: Macintosh HD/Library/Caches/ and Macintosh HD/Users/UserName/Library/Caches/. You lose some of your application preferences, but things are all but guarenteed to be snappy.

Repair Permissions with the Disk Utility: You can either view permissions or fix permissions. Just go straight for fixing permissions and get a cup of tea and read a magazine while you wait.

Reboot on a regular basis: I don't care what anybody says about uptime; the occasional reboot does wonders. My Macs are real workhorses, and I reboot Monday mornings when I get in. I rarely, if ever these days, have problems.

Plan B: The Not So Obvious

Let Spotlight index when it finds new stuff: Spotlight makes for good searches, but it's indexing processes are a real hassle. If things slow down, I first look for the little dot in the magnifying glass in the menu bar icon. If that's going, I go get a cup of coffee or find something else to do.

Look for background services you may have forgotten: Also, look for any background processes that may be dragging things down. Look at your login items in the System Preferences, because maybe you have some kind of a server daemon that loads in the background you forgot about. Or maybe you have your iTunes library shared and enough people are on listening to content to slow things down (this was also a problem at my company).

Check free hard drive space: I have also noticed in the past that things can slow down if I don't have enough hard drive space. Things really get wonky on my Macs when I have less than 10% free space, so I start cleaning things off when I am at the 20% free space threshold.

Plan C: System Level

Look for multiple, related processes: Check Activity Monitor for anything that might be hogging CPU time. Don't just look for a single process that has a high number, but also look multiple processes that might be related. I recently had a problem with McAfee AntiVirus (my company's IT department foisted it onto us) trying to almost continuously scan my iDisk. No process got above 2%, but there were over a half dozen of them. Once I disconnected my iDisk, McAfee was no longer a problem.

Let overnight processes run: Most days I leave my Macs on all day and all night because there a number of system processes that run at around 2:00a, Sunday mornings being especially important (that's when the weekly and monthly processes run). Do a quick reboot and all should be well.

Plan Z

Apple Certified Technicians are your friends: Third-party system maintenance software is not. I've been working with Macs for years and the one immutable fact that I have learned is that applications designed to help maintain the system are more trouble than they are worth. When all else fails, take it in because there may be a hardware problem at this point.

I afraid you might be in for a struggle having done this upgrade on a mid-2009 15" MacBook Pro and I'm not alone in having the problem. I ended up having to replace the drive cable and switch to using an SATA2 rather than SATA3 drive to get an replacement drive (SSD or magnetic) to work. The problem is documented on the OWC web site.

As I recall, I got a larger replacement magnetic drive to work by downgrading the firmware but getting an SSD to work required upgrading to firmware, replacing the cable, and getting an SATA2 drive. If you already have the drive, start with the cable and maybe that will be good enough.

I've cloned lots of drives to external drives and then swapped in the external drive for the internal without a problem so I think it's far more likely you have the hardware compatibility problem than a software issue.

BTW, even with a SATA2 drive, the upgraded system flies.