MacOS – How to i change Terminal Settings to automatically close terminal after Execution using shell script

AppleScript is a nice way to go !

tell application "System Preferences"
    reveal pane "com.apple.preference.mouse"
end tell
tell application "System Events" to tell process "System Preferences"
    tell checkbox 1 of window 1
        click
    end tell
end tell

It works on Mavericks. It might need some modifications on older OS X because the UI of the mouse preferences changed.

The problem here is you have the input being passed to stdin. I don't know why that's the default, but you should be able to just change the popup menu in the top right to "as arguments." I did that and added cd "$1" to the top of the script and it worked.