SOLVED IT! (At least for me...)
I'm using a Logitech Anywhere Mouse MX, and was having the EXACT same problem not being able to assign Show Desktop, Mission Control, etc., to the mouse buttons from the System Preferences-> Mission Control area as I had previously.
The reason is because I had installed Logitech's proprietary Control Center software which overrides selections in System Preferences -> Mission Control.
Simple Fix:
Go to System Preferences-> Logitech Control Center
From here click on the image of your mouse that appears on the screen, which will make available the "Configure..." button, upon which you should now click.
On the next page, this is where the magic happens! You see the available buttons on the left side of the screen, and the actions you are able to assign to those buttons on the right side of the screen (Assigned action). When you click on an action item in the right column, a drop down menu appears allowing you to choose which action or area of action you want assigned to the corresponding mouse button in the left column. Choose "Mission Control".
When you do this, the bottom half of the screen will give you radio button options to choose which specific action within "Mission Control" you want to assign to that mouse button, such as "Desktop".
In the attached picture on my next post, you will see that I have opted to assign to my "Thumb Back" button the "Mission Control" radio button.
And that's it!
While it was annoying at first not to be able to assign actions to my mouse buttons from the original Mission Control area in System Preferences, I have found I much prefer there Logitech Control Center as I don't have to guess which button corresponds with "Mouse Button 4" or "Mouse Button 6", etc. The actual button names, along with their representative icons are used in this new location, and, as before, the moment you assign an action to a button, it works. You don't need to close the window for your selections to take effect, which is as it was before, and quite wonderful.
Hope this helps!!
I had tried this last year but then it didn't work. I tried it again and now it did work:
Start terminal and execute the following commands:
defaults write com.apple.dock mcx-expose-disabled -bool FALSE (this
enables mission control)killall Dock (kill and automatically restart the Dock, this is
necessary to get it done)
There is an article about hot corners missing dashboard and mission control.
Best Answer
Had this issue November 2016 running OS 10.12.1 "Sierra" an additional symptom is that Mission Control was not launching. I fixed it by opening Activity Monitor, Quit the dock (force quit was not necessary). Went back to normal