After upgrading to iOS 9, I can't transfer purchases from my iPhone to iTunes. It happens to just start the process, then it finishes without transferring anything. However, I can still transfer purchases from my iPad with iOS 8.4 like before.
- iPhone 5c, iOS 9
- iTunes 12.3
- MacBook Pro 13" with Retina Display Mid 2014, OS X El Capitan
Apparently, not many people happen to use this "transfer purchases" feature so it didn't get any real attention. I used it a lot, I used to update my apps on my iPhone, transfer them to iTunes and updated my iPad apps using iTunes. Still, I can update my apps using iTunes and update apps on all my devices.
Best Answer
Actually, this is not a problem. Transferring purchases from devices with iOS 9 has been disabled by Apple. This is the response they gave to submitted bug reports regarding this issue:
As NetherLinks explained in the comments, it's because of the App Thinning feature Apple introduced in iOS 9. Basically, a different version of each app is downloaded on each device. So, apps downloaded on an iPhone cannot be used on an iPad. See image below taken from App Thinning page in iOS Developer Library.